Don't think so.
But you can autogenerate a file that contain those lines through the command prompt:
If you cd into a dir (eg. main) with say fileA.sqf and fileB.sqf then it will create file compile.sqf:
for %f IN (*) do echo call compile preProcessFileLineNumbers "main\%f"; >> compile.sqf
And so on for all files. If you put the one-liner in a .bat file you may need to use %%f instead of %f.
call compile preProcessFileLinenumbers "main\fileA.sqf";
call compile preprocessFileLinenumbers "main\fileB.sqf";